FastQCFastQC Report
Sat 2 Jul 2022
EGAF00005729540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005729540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121049366
Sequences flagged as poor quality0
Sequence length101
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGGAACATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17737021.4652716148880947No Hit
GGCCGGAACATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA5930350.48991169437434307No Hit
GGCCGGAACATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC1733120.14317464496261798No Hit
GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCA1452990.12003284676435232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)