FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183563368
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG131900.022.5975249
GACCGAC174450.017.58015632
GATCGGA217650.016.09491
GTTACCT1849350.015.8429617
AGTTACC1751750.015.6543376
TACCTTG1957450.015.0861159
ACCGACC212200.014.40391133
TCGTATG227650.013.80519646
ATCGGAA263200.013.4891732
TTACCTT2264700.013.2023868
CCAGTTA1755600.013.1342654
CAGTTAC1910250.013.13098055
ACCTTGT2293250.013.05603110
AATGCCG282350.012.90232524
CTCGTAT233300.012.86460245
AGACCGA242350.012.72583731
GAGCGGT290650.012.3084339
CGACCCA255400.012.04858535
CCTTGTT2564300.011.81186711
ATGCCGA309050.011.74299325
Produced by FastQC (version 0.11.5)