FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183563368
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA123050.022.05621346
GCGTCGT142600.019.85896911
GGATTTA1077900.019.2561111
GCCGTAT148450.018.5137947
GATTTAG1051950.018.2224352
TAGAGCG862800.018.0851315
GTTCGGT852900.017.79791548
TCGGTCC1150250.017.63936850
CGGTCCT1369300.017.15491951
GGGTTCG969900.016.84279846
TTCGGTC916050.016.52990749
GGTTCGG1007850.016.39258647
CGCTTGC880300.016.35018220
CGTATCA168750.016.20524649
GCGCTTG876050.016.02151719
TTAGCTC1361100.015.9465443
ATCGGTC338250.015.57800249
GCAAGCG1092700.015.57102330
AGCGTCG187550.015.52238910
ATTTAGC1768350.014.76563551
Produced by FastQC (version 0.11.5)