FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174689426
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG131650.018.94274549
TCGTATG175000.014.80161646
GATCGGA204800.013.2250821
CTCGTAT207400.012.22322445
AGTTACC804650.012.1316416
GTTACCT858550.012.0417587
AGACCGA222350.011.65129431
TACCTTG967750.010.8245179
AATGCCG273050.010.6667624
CGTATGC245900.010.64609847
ATCGGAA265000.010.5816222
ACCGAGA265450.09.8903833
GAGCGGT283400.09.8496019
AAGAGCG291800.09.741167
GACCGAG279250.09.59854232
AATCTCG258650.09.49504142
CCAGTTA912100.09.3973464
CAGTTAC978050.09.3279495
TTACCTT1154800.09.2849658
ATGCCGA313650.09.25300925
Produced by FastQC (version 0.11.5)