FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153701659
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG114000.022.05930949
TCGTATG130650.019.69629546
ACCGAGC164200.015.75713533
GATCGGA205750.014.9407431
CGTATGC178950.014.90082347
AGACCGA176350.014.592648531
CTCGTAT177850.014.21690945
CGAGCAT186300.013.9989835
GAGCGGT234050.013.1341699
AATGCCG251050.012.54907924
AAGAGCG250150.012.3696077
ATCGGAA265350.012.0971312
GACCGAG219400.012.07545332
GCGGTTC262350.012.05978111
CGGTTCA257850.011.98946612
CCGAGAC244550.010.96175928
AGTTACC591850.010.7642086
GAGACCG248700.010.65237930
GTTACCT636900.010.5832077
ATGCCGA307550.010.20990725
Produced by FastQC (version 0.11.5)