FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163976264
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA139600.027.20866846
GCCGTAT159500.023.96604747
GCGTCGT171950.022.8268711
CGTATCA169550.022.60652249
CGTGTAG195200.020.3314215
AGCGTCG213350.018.97936610
TCGTGTA218200.017.94990514
CCGTATC230050.017.12621548
GTCGTGT236050.016.71531513
GATCGGA251600.016.5911481
GTCGCCG262900.015.2603544
TCGCCGT257500.015.04554545
GTAGATC280800.014.76537231
TGGTCGC271250.014.57241442
ATCGGAA292300.014.3641282
GGTCGCC291100.013.83929143
CGTCGTG293800.013.65271912
TCTCGGT321250.012.92542236
AGAGCGT356600.011.7609798
GTGTAGG362350.011.70635416
Produced by FastQC (version 0.11.5)