FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179037247
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA111300.016.5520546
GCGTCGT121100.015.77883611
GTTCGGT300750.013.65082450
GCCGTAT136200.013.55171447
TCGGTCC465100.012.80065252
GGGTTCG368250.012.77877348
CGTATCA152100.012.24847749
CGGTCCT586100.012.00173253
AGCGTCG165050.011.93245910
CGTGTAG167350.011.75426815
TAGAGCG261700.011.35450217
GGTTCGG437000.010.90259449
ATCGGTC174650.010.84358451
TTCGGTC396950.010.2284551
TCGTGTA200700.09.88648114
CCGTATC205950.09.33062948
GTCGTGT216250.09.28250813
TCGCCGT205700.09.2746345
GCAAGCG546750.09.08446932
GATCGGT217000.09.07807850
Produced by FastQC (version 0.11.5)