FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169870649
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAT131450.022.74767132
TATGCCG132900.021.98005549
GATCGGA195050.019.0681611
TCGTATG164200.018.33554346
ACCGATC179500.017.04272333
ATCGGAA240650.015.8696882
GTTACCT1308900.015.0203867
CTCGTAT196200.014.85287145
AGTTACC1269200.014.3994696
AAGAGCG276550.014.2331467
TACCTTG1397200.014.1628279
GAGCGGT269800.014.1317349
AATGCCG271300.013.98863724
CGTATGC220450.013.92355847
AGACCGA224700.013.75239731
GCGGTTC304200.012.78320611
CGGTTCA306650.012.56842412
ATGCCGA313400.012.34022725
TTACCTT1674250.012.002918
ACCTTGT1715500.011.65166310
Produced by FastQC (version 0.11.5)