FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170379530
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTACCT1484050.015.2020647
AGTTACC1416500.014.8248786
TATGCCG117950.014.56509849
TACCTTG1602400.014.1410049
TTACCTT1804400.012.6871928
CAGTTAC1562150.012.2094425
ACGATAT133750.012.14868138
ACCTTGT1906950.012.10336210
CCAGTTA1453000.012.0232854
GATCGGA188850.011.4237751
AGACCGC166450.010.7156231
CGCACGA169350.010.69471335
CCTTGTT2211300.010.54364511
TCGTATG186600.010.09323746
GCCAGTT1733750.09.9867293
TATCTCG161800.09.72202842
CTCGTAT189850.09.21184445
CTTGTTT2607500.09.1592112
GTGCCAG1750350.09.0754531
CGGTTAC123450.08.9685033
Produced by FastQC (version 0.11.5)