FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005730110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005730110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166915345
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATTTA1151150.024.1005271
GATTTAG1235700.021.1634122
GTTCGGT1042050.019.99833750
TCGGTCC1430000.019.5623952
GGGTTCG1206500.019.00319548
CGGTCCT1694400.018.86293853
TAGAGCG935250.018.78387817
GGTTCGG1229750.018.70843749
TTCGGTC1123800.018.49228151
CGCTTGC889050.017.11204722
GCGCTTG897750.016.54210721
GCAAGCG1292050.016.42988632
ATCGGTC435050.016.3351351
CGCAAGG1448700.016.06233237
TTAGCTC1348800.015.9539875
AGAGCGC1189350.015.68726818
AAGCGCA1517000.015.62757534
GGTCCTC2129600.015.36726354
GTAGAGC1155550.015.295670516
AGCGCAA1580100.014.99941335
Produced by FastQC (version 0.11.5)