FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005732238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005732238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1004779
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGTATGCC405354.034220460419655RNA PCR Primer, Index 40 (100% over 51bp)
TCGTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC369123.673643656963372RNA PCR Primer, Index 1 (100% over 33bp)
CCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCA160771.6000533450639394RNA PCR Primer, Index 1 (97% over 37bp)
GTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT126021.254206148814814RNA PCR Primer, Index 1 (97% over 35bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCTGGAATTCTCGGGTGCC118801.182349551493413No Hit
TTCACAGTGGCTAAGTTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC114671.1412459854356032RNA PCR Primer, Index 1 (100% over 31bp)
AATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGTATGCCGTC109721.0919814207900442RNA PCR Primer, Index 40 (100% over 51bp)
GGAATACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCC107471.0695884368602449RNA PCR Primer, Index 1 (100% over 27bp)
TCCTTCATTCCACCGGAGTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAG94930.9447848730914957RNA PCR Primer, Index 1 (100% over 29bp)
GGAATACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCA72610.7226464725078848RNA PCR Primer, Index 1 (100% over 28bp)
ACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTC58040.5776394610158055RNA PCR Primer, Index 1 (97% over 36bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTTGGAATTCTCGGGTGCCAA55980.5571374401734113No Hit
GAATACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCA54420.5416116379820837RNA PCR Primer, Index 1 (100% over 28bp)
TAGCTTATCAGACTGATGTTGACTGGAATTCTCGGGTGCCAAGGAACTCCA51740.5149391060123669RNA PCR Primer, Index 1 (100% over 28bp)
TACCCTGTAGAACCGAATTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG49840.496029475138314RNA PCR Primer, Index 1 (100% over 29bp)
TAGCTTATCAGACTGATGTTGATGGAATTCTCGGGTGCCAAGGAACTCCAG48490.48259368478043424RNA PCR Primer, Index 1 (100% over 29bp)
CCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC47980.4775179417563464RNA PCR Primer, Index 2 (100% over 34bp)
CACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT47170.46945646754161857RNA PCR Primer, Index 1 (97% over 35bp)
GGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGTATGCCG45000.44785967859598974RNA PCR Primer, Index 40 (100% over 51bp)
GGGGATTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCG40840.40645753941911605RNA PCR Primer, Index 40 (100% over 45bp)
GAATACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAG40610.40416847883962537RNA PCR Primer, Index 1 (100% over 29bp)
CTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGTATGCCGTCTTCT39710.39521128526770566RNA PCR Primer, Index 40 (100% over 51bp)
TGAGGTAGTAGGTTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG34150.33987573386784553RNA PCR Primer, Index 1 (100% over 29bp)
TCCTTCATTCCACCGGAGTCTGTTGGAATTCTCGGGTGCCAAGGAACTCCA31850.31698512807293944RNA PCR Primer, Index 1 (100% over 28bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTTGGAATTCTCGGGTGCCA31750.3159898843427261No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCCTGCTGGAATTCTCGGGTGCCA29860.2971797778416945No Hit
GGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGT29490.2934973760399053RNA PCR Primer, Index 40 (100% over 46bp)
TCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGTATGCCGTCTTC28780.2864311455553908RNA PCR Primer, Index 40 (100% over 51bp)
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTGGAATTCTCGGGTGCC28670.2853363774521561No Hit
GTTTGTGATGACTTACATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC28480.28344541436475085RNA PCR Primer, Index 2 (100% over 34bp)
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTGGAATTCTCGGGTGCC27580.2744882207928311No Hit
GTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCA27400.2726967820784471RNA PCR Primer, Index 1 (97% over 37bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTGGAATTCTCGGGTGC27110.26981057526082847No Hit
AATACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAG26890.26762103905435924RNA PCR Primer, Index 1 (100% over 29bp)
ATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGTATGCCGTCT26150.26025623545078075RNA PCR Primer, Index 40 (100% over 51bp)
AATACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGT26120.2599576623317167RNA PCR Primer, Index 1 (100% over 30bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGATGGAATTCTCGGGTGCCA25990.2586638454824394No Hit
TGAGGTAGTAGTTTGTGCTGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG25920.2579671748712901RNA PCR Primer, Index 1 (100% over 29bp)
CAACGGAATCCCAAAAGCAGCTGTGGAATTCTCGGGTGCCAAGGAACTCCA25810.2568724067680555RNA PCR Primer, Index 1 (100% over 28bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCTGGAATTCTCGGGTGCC25730.25607621178388484No Hit
TGAGGTAGTAGATTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG25570.2544838218155435RNA PCR Primer, Index 1 (100% over 29bp)
TGAGATGAAGCACTGTAGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC25070.24950760316447698RNA PCR Primer, Index 1 (100% over 31bp)
TTCACAGTGGCTAAGTTCTGCTGGAATTCTCGGGTGCCAAGGAACTCCAGT25060.24940807879145563RNA PCR Primer, Index 1 (100% over 30bp)
AACATTCAACGCTGTCGGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCAG23660.23547466656846927RNA PCR Primer, Index 1 (100% over 29bp)
TTGTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC23220.23109559415553071RNA PCR Primer, Index 1 (100% over 33bp)
GGGAATACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTC21700.21596788945628836RNA PCR Primer, Index 1 (100% over 26bp)
AAGCTGCCAGTTGAAGAACTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG21610.2150721700990964RNA PCR Primer, Index 1 (100% over 29bp)
CGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCG21370.21268358514658445RNA PCR Primer, Index 40 (100% over 45bp)
GGGGGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCG21080.2097973783289659RNA PCR Primer, Index 40 (100% over 45bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGTGGAATTCTCGGGTGCCA20720.20621450090019797No Hit
TGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTC20410.2031292453365367RNA PCR Primer, Index 1 (97% over 36bp)
ATACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAGT20230.20133780662215275RNA PCR Primer, Index 1 (100% over 30bp)
GTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAAT20200.20103923350308872RNA PCR Primer, Index 40 (100% over 41bp)
GGGGCTACGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACT19050.18959393060563567RNA PCR Primer, Index 1 (100% over 25bp)
TCGTGGTTGTAGTCCGTGCGAGAATACCATGGAATTCTCGGGTGCCAAGGA18810.18720534565312372RNA PCR Primer, Index 1 (100% over 22bp)
ATACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC18720.18630962629593173RNA PCR Primer, Index 1 (100% over 31bp)
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTTGGAATTCTCGGGTGCCAA18140.18053721266069453No Hit
TATTGCACTTGTCCCGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG17870.17785005458911862RNA PCR Primer, Index 1 (100% over 29bp)
GCCGGGCGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATC17710.1762576646207773RNA PCR Primer, Index 40 (100% over 42bp)
GGGAATACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCC17320.1723762140729454RNA PCR Primer, Index 1 (100% over 27bp)
GGAATACCGGGTGCTGTAGGCTCTTGGAATTCTCGGGTGCCAAGGAACTCC17270.17187859220783874RNA PCR Primer, Index 1 (100% over 27bp)
TCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAG17160.1707838241046041RNA PCR Primer, Index 40 (100% over 38bp)
TAGCAGCACGTAAATATTGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAG17150.17068429973158278RNA PCR Primer, Index 1 (100% over 29bp)
GGAATACCGGGTGCTGTAGGCTCTGGAATTCTCGGGTGCCAAGGAACTCCA17070.16988810474741212RNA PCR Primer, Index 1 (100% over 28bp)
CGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA17020.16939048288230546RNA PCR Primer, Index 1 (100% over 32bp)
GGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCG16930.1684947635251135RNA PCR Primer, Index 40 (100% over 45bp)
CCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC16900.1681961904060495RNA PCR Primer, Index 1 (100% over 33bp)
CCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC16850.16769856854094284RNA PCR Primer, Index 2 (100% over 34bp)
AACATTCAACGCTGTCGGTGAGTTGGAATTCTCGGGTGCCAAGGAACTCCA16810.1673004710488575RNA PCR Primer, Index 1 (100% over 28bp)
GAATACCGGGTGCTGTAGGCTCTGGAATTCTCGGGTGCCAAGGAACTCCAG16800.16720094667583618RNA PCR Primer, Index 1 (100% over 29bp)
GCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC16630.16550903233447353RNA PCR Primer, Index 1 (100% over 33bp)
TTCAAGTAATCCAGGATAGGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG16500.16421521548519624RNA PCR Primer, Index 1 (100% over 29bp)
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCTGGAATTCTCGGGTGCC16320.1624237767708123No Hit
ACGTTCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATC16170.16093091117549232RNA PCR Primer, Index 40 (100% over 42bp)
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTGGAATTCTCGGGTGCC16050.15973661869923633No Hit
GAATACCGGGTGCTGTAGGCTCTTGGAATTCTCGGGTGCCAAGGAACTCCA15400.15326753445284982RNA PCR Primer, Index 1 (100% over 28bp)
TACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC15390.1531680100798285RNA PCR Primer, Index 1 (100% over 31bp)
CGCGACCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTC15250.15177466885752988RNA PCR Primer, Index 40 (100% over 44bp)
ACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA15090.15018227888918856RNA PCR Primer, Index 1 (100% over 32bp)
AAGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCG15050.14978418139710326RNA PCR Primer, Index 40 (100% over 45bp)
CGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAA15050.14978418139710326RNA PCR Primer, Index 40 (100% over 40bp)
ACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC14880.14809226705574063RNA PCR Primer, Index 1 (100% over 33bp)
TGAGGTAGTAGGTTGTGTGGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG14520.1445093896269727RNA PCR Primer, Index 1 (100% over 29bp)
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTTGGAATTCTCGGGTGCCA14370.14301652403165271No Hit
CGACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT14210.14142413406331142RNA PCR Primer, Index 1 (97% over 35bp)
CTGGGAATACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAAC14170.14102603657122612RNA PCR Primer, Index 1 (100% over 24bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATGGAATTCTCGGGTGCC14010.1394336466028848No Hit
ACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCA13880.1381398297536075RNA PCR Primer, Index 1 (97% over 37bp)
TTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGTATGCCGTCTT13690.13624886666620223RNA PCR Primer, Index 40 (100% over 51bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGGAATTCTCGGGTGCCAAGG13540.13475600107088226Illumina Small RNA Adapter 2 (100% over 21bp)
CGGGGCTACGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAAC13520.1345569523248396RNA PCR Primer, Index 1 (100% over 24bp)
TACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA13510.13445742795181825RNA PCR Primer, Index 1 (100% over 32bp)
GGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTC13440.13376075734066895RNA PCR Primer, Index 1 (97% over 36bp)
GCATTGTGGTTCAGTGGTAGAATTCTCGCCTTGGAATTCTCGGGTGCCAAG13150.13087455052305036No Hit
TAACACTGTCTGGTAAAGATGTGGAATTCTCGGGTGCCAAGGAACTCCAGT12930.12868501431658105RNA PCR Primer, Index 1 (100% over 30bp)
CGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT12780.12719214872126108RNA PCR Primer, Index 1 (97% over 35bp)
CGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC12680.12619690499104777RNA PCR Primer, Index 2 (100% over 34bp)
TAGCTTATCAGACTGATGTTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT12590.1253011856338558RNA PCR Primer, Index 1 (100% over 30bp)
CATTATTACTTTTGGTACGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGT12350.12291260068134385RNA PCR Primer, Index 1 (100% over 30bp)
TCCTGTACTGAGCTGCCCCGAGTGGAATTCTCGGGTGCCAAGGAACTCCAG12250.12191735695113055RNA PCR Primer, Index 1 (100% over 29bp)
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTCTGGAATTCTCGGGTGCCA12130.12072306447487458No Hit
CTCGACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC12080.1202254426097679RNA PCR Primer, Index 1 (100% over 33bp)
TCGTATGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC12070.12012591823674658RNA PCR Primer, Index 1 (100% over 33bp)
TCGACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC11710.11654304080797866RNA PCR Primer, Index 2 (100% over 34bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGGAATTCTCGGGTGCCAAG11700.11644351643495733No Hit
GTCTACGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAAT11690.116343992061936RNA PCR Primer, Index 40 (100% over 41bp)
TCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCT11670.11614494331589334RNA PCR Primer, Index 40 (100% over 43bp)
TGAGGTAGTAGGTTGTATGGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG11570.11514969958568004RNA PCR Primer, Index 1 (100% over 29bp)
CATTGCACTTGTCTCGGTCTGATGGAATTCTCGGGTGCCAAGGAACTCCAG11570.11514969958568004RNA PCR Primer, Index 1 (100% over 29bp)
CAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAA11550.11495065083963739RNA PCR Primer, Index 40 (100% over 40bp)
GGGCTACGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTC11510.11455255334755206RNA PCR Primer, Index 1 (100% over 26bp)
CTCGGGTGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATC11470.11415445585546674RNA PCR Primer, Index 40 (100% over 42bp)
GGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTC11360.11305968775223209RNA PCR Primer, Index 1 (97% over 36bp)
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTTGGAATTCTCGGGTGCCA11270.11216396839504011No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTTGGAATTCTCGGGTGCCAAG11180.11126824903784811No Hit
GGAATACCGGGTGCTGTAGGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG11110.1105715784266988RNA PCR Primer, Index 1 (100% over 29bp)
CTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT11110.1105715784266988RNA PCR Primer, Index 1 (97% over 35bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTGACTGGAATTCTCGGGTG10810.10758584723605887No Hit
GGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT10720.10669012787886689RNA PCR Primer, Index 1 (97% over 35bp)
CTCGTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA10650.10599345726771758RNA PCR Primer, Index 1 (100% over 32bp)
TACCCTGTAGATCCGAATTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG10530.10479916479146162RNA PCR Primer, Index 1 (100% over 29bp)
CGTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC10510.10460011604541894RNA PCR Primer, Index 2 (100% over 34bp)
GGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCA10430.10380392106124829RNA PCR Primer, Index 1 (97% over 37bp)
CCACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC10260.10211200671988567RNA PCR Primer, Index 2 (100% over 34bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCTGGAATTCTCGGGTGC10260.10211200671988567No Hit

[FAIL]Adapter Content

Adapter graph