FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005732419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005732419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences333613965
Sequences flagged as poor quality0
Sequence length8-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG6911040.20715679572945933No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA6896670.2067260583650927No Hit
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG5961750.17870205163623773No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT4246840.12729802842635798No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC3741670.11215567669656754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)