FastQCFastQC Report
Wed 22 May 2024
EGAF00005732461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005732461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112008000
Total Bases11.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGAGAGATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT12203341.0895061067066638No Hit
CCCGAGAGATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA2450530.2187816941647025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)