FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005732595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005732595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139319879
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT283550.023.579581
GATCGGA239150.022.2302421
CGTATCA127050.019.4961449
CGCCGTA146850.019.0275846
TCCGATC153500.018.54223324
TGAACCG347800.017.09006913
TAGCATA566650.016.8630318
AACCGCT266500.015.15928815
GTAGCAT642100.015.0852297
CATATGC647400.014.95156711
GCATATG652950.014.84031310
GTACGCA644250.014.57580549
TACGCAC645850.014.54055250
AGTACGC649050.014.45724548
GCGTCGT162350.014.06621911
GCGGTGT438950.013.9742551
ACGCACG679100.013.96749451
GCCAGTA694750.013.9181763
AAGTACG692600.013.73719247
TCGGAAG377000.013.6342953
Produced by FastQC (version 0.11.5)