FastQCFastQC Report
Sat 25 May 2024
EGAF00005732599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005732599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130912665
Total Bases9.8 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT2462850.18812923867984813No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG1810940.13833191769489986No Hit
GCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGC1356840.10364467028457483No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG1313330.10032108046994535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)