FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005732601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005732601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100299345
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA209800.047.07605749
CGCCGTA233950.044.90212646
GCCGTAT278150.038.7713447
TCCGATC193700.038.75550524
GATCGGA448100.037.3058471
CCGTATC298550.035.29009648
CCGATCA210950.031.89004325
CGGCATT254800.031.1448691
TGGTCGC290250.030.9429242
TTCCGAT265950.030.4839923
GCGTCGT322100.030.36281611
GGTCGCC411150.030.3030543
AACCGCT263500.030.16539615
AGATCGG243950.029.71173931
TCGGAAG548200.029.4287833
GTATCAT345850.028.60772950
TGAACCG315600.027.89515313
AGAGCGT427400.027.6880478
ATCGGAA604000.027.5041732
AAGAGCG534300.027.372287
Produced by FastQC (version 0.11.5)