FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005732613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005732613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171122518
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT457850.035.0905341
CGTATCA192850.029.2967249
TGAACCG492850.029.27998713
TCCGATC255600.028.63663524
CGCCGTA215550.028.3088746
GATCGGA453450.026.9269751
GCCGTAT281900.023.21303247
AACCGCT407250.022.78354615
CCGATCA255550.022.56690225
TCGGAAG576250.020.9144843
TTCCGAT388300.020.58960323
AGATCGG311750.020.18745631
CTTCCGA417500.019.89334122
ATCGGGA390800.019.7356952
GCGTCGT253850.019.2557611
AAGAGCG538300.018.7562667
CCGTATC333700.018.60716448
AGAGCGT381500.018.4139798
CGCTCTT439150.017.8914518
ATCGGAA698850.017.51692
Produced by FastQC (version 0.11.5)