EGAF00005732614 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005732614
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	100829665
Sequences flagged as poor quality	0
Sequence length	75
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCGAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA	332117	0.3293842144571243	Illumina Paired End PCR Primer 2 (97% over 39bp)
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTG	115365	0.11441573271120162	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	81390	63.58272	46
CGTATGC	82630	62.866245	47
TATGCCG	82855	62.297085	49
CTCGTAT	78990	61.928967	45
CGAAATC	81765	58.600338	39
ATGCCGT	89355	56.543118	50
GTATGCC	95785	54.12772	48
GCCGTCT	93705	53.770653	52
GATCGGA	134260	53.564045	1
TCTCGTA	88710	52.50073	44
CCGTTCG	104925	52.334515	34
TGCCGTC	97775	51.70511	51
AGCGGTT	138475	51.162083	10
AATGCCG	139525	51.09495	24
GACCGTT	108375	50.854206	32
TCGAAAT	100320	50.801865	38
TCGGAAG	146985	50.27852	3
ACCGTTC	109185	50.264126	33
AAGAGCG	146125	49.915314	7
ATCTCGT	93835	49.846706	43