FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005732640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005732640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133076869
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG117800.032.9389446
TATGCCG130350.029.9271549
GACCGTA144550.027.34879732
GATCGGA168900.025.305551
CGTATGC180800.021.93823847
CTCGTAT195400.019.91037445
TATCTCG192500.019.43911742
ACCGTAG226650.017.60944433
AAGAGCG264750.016.7840217
GTATGCC239100.016.5891148
AATGCCG289250.015.33677824
GAGACCG274900.014.79495130
AGACCGT285450.014.22388131
GCTTATC271900.014.19415539
ATCAACG451950.014.13712121
ATGCCGA322400.013.877480525
CCGAGAC295700.013.8713528
TCAACGC461200.013.85415122
CGAGACC295250.013.74016429
TAGCTTA296550.013.65441137
Produced by FastQC (version 0.11.5)