FastQCFastQC Report
Thu 11 Aug 2022
EGAF00005733127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41518102
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGCGTAGCGTGTAGATCT3066310.7385477303369985Illumina Single End PCR Primer 1 (97% over 34bp)
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCG466930.11246419694233614No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT437170.10529623921633026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)