FastQCFastQC Report
Tue 9 Aug 2022
EGAF00005733146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50793145
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1124290.22134679787991074No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT939590.18498362328223622No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA917570.18064839261282206No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG891480.17551187271432003No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTGGCTCATCTCGTAT558660.10998728273273885TruSeq Adapter, Index 12 (97% over 37bp)

[OK]Adapter Content

Adapter graph