FastQCFastQC Report
Thu 16 May 2024
EGAF00005733148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40394465
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT701460.17365250412401798No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC515250.12755460432512228No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG419000.10372708241091942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)