FastQCFastQC Report
Tue 9 Aug 2022
EGAF00005733201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34755357
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT487520.14027190110577772No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC468980.1349374716536504No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA399360.11490602729242573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)