FastQCFastQC Report
Tue 9 Aug 2022
EGAF00005733207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41184552
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT545270.13239672972526204No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC536890.13036198621269451No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA454410.11033505961167187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)