FastQCFastQC Report
Fri 3 May 2024
EGAF00005733293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35382408
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT432910.12235176305694061No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC427690.1208764536319857No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA426110.12042990403592654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)