FastQCFastQC Report
Thu 6 Oct 2022
EGAF00005733361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42796044
Sequences flagged as poor quality0
Sequence length150
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1004280.23466655002037104No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA925960.21636579306255505No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG890190.20800754387484974No Hit
AAGCCCAAGTTTCTACACAATACTCCCCCAGCAAATCGTATTGTAGAAAT597920.13971384831738187No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA589040.1376388901740544No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG502360.11738468163085354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)