FastQCFastQC Report
Sun 23 Oct 2022
EGAF00005733362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42796044
Sequences flagged as poor quality0
Sequence length150
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT858310.20055825720713813No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCG748370.1748689668605818No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCG716850.16750380011759966No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT526700.12307212320839749No Hit
TTTTGAAGACGTTTAGGAGGAAGGGTGAGTTTTCTGTTGAGAAACTCAAT505570.11813475095969152No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG461730.10789081345930011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)