FastQCFastQC Report
Fri 3 May 2024
EGAF00005733655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196616089
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC5429377827.614107409083903No Hit
ATAGGCCA5392507927.42658511532085No Hit
TCTCAGTG4854122024.68832548083082No Hit
GAGACTAT3840507519.53302763539356No Hit
TCTCAGTA2369540.1205160784171635No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)