FastQCFastQC Report
Sat 11 May 2024
EGAF00005733656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204772882
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGAGAA5497419226.846421978863393No Hit
TCGTCACG4443994021.702063069073766No Hit
GTAATTGC4394120421.45850738185147No Hit
AGTCGCGT4010408919.58466795422648No Hit
AGTCGCTT199069489.721476694360339No Hit
AGTCGCTA2896480.14144841698326052No Hit
AGTCGCTG2253610.1100541232798589No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)