FastQCFastQC Report
Sat 11 May 2024
EGAF00005733657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198985261
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGAGAA5433326727.305171612685424No Hit
TCGTCACG4392621322.075108869495615No Hit
GTAATTGC4344953721.835555448501285No Hit
AGTCGCGT4101724520.613207628478573No Hit
AGTCGCTT147325227.403825753707456No Hit
AGTCGCTG3093940.155485887972376No Hit
AGTCGCTA2753890.1383966825563025No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)