FastQCFastQC Report
Wed 8 May 2024
EGAF00005733658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90381382
Total Bases723 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCCA2562568028.35283045351088No Hit
CGCTATGT2243152424.818744196675375No Hit
TTGAGATC2200854224.350747369629733No Hit
AAACCGAG1924056621.28819627918502No Hit
GTGAGATC1040030.11507126545155064No Hit
AACCCGAG1013510.11213703282386188No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)