FastQCFastQC Report
Wed 8 May 2024
EGAF00005733659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91238066
Total Bases729.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCCA2582171428.301470134187195No Hit
CGCTATGT2258246024.751138411899262No Hit
TTGAGATC2229405924.435041181166643No Hit
AAACCGAG1943922621.30604785068548No Hit
GTGAGATC1041350.11413547498913448No Hit
AACCCGAG996820.10925483668187355No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)