FastQCFastQC Report
Sat 11 May 2024
EGAF00005733660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162154273
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC5413988533.387886731791525No Hit
ACCGTATG3823666623.580424550390973No Hit
CTGACTGA3718347422.930924552324317No Hit
GATTAGAT3012653618.57893439539518No Hit
GAGTAGAT9484330.5848954717338839No Hit
TGACGCCA3072420.18947511793290825No Hit
ACCGTATA2260820.13942401628848844No Hit
GCTTAGAT1933250.11922288350674545No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)