FastQCFastQC Report
Fri 10 May 2024
EGAF00005733662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155820372
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC4963564931.854402837646926No Hit
TGGTGTTT4136091126.54396884638422No Hit
GATCAGCA3676459023.59421270024949No Hit
ACAACAGG2640046516.942884079368003No Hit
TGGTGTTA2206450.1416021519958892No Hit
TGGGGTTT1596520.10245900324252852No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)