FastQCFastQC Report
Sat 11 May 2024
EGAF00005733663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164327938
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC5483872033.37151349151597No Hit
ACCGTATG3884257623.63723203293648No Hit
CTGACTGA3761722422.891557246948476No Hit
GATTAGAT3056608018.60065937174968No Hit
GAGTAGAT9886470.6016305030249939No Hit
TGACGCCA3128710.19039428341150363No Hit
ACCGTATA2315170.14088718133857434No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)