FastQCFastQC Report
Sat 11 May 2024
EGAF00005733670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences188620835
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCTTA5541551029.379315386871234No Hit
GCTTGGCT5115490627.12049599398709No Hit
TTCATCGG4168280722.098728912953863No Hit
AAACAAAC3891251020.630016827144253No Hit
CGGGCTAA2117090.11224051680186868No Hit
AAACAAAA2017290.1069494788314345No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)