FastQCFastQC Report
Fri 10 May 2024
EGAF00005733671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153527711
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT5227042334.04624654372656No Hit
ACCCGACG4038354926.30375242160681No Hit
TGATATTC3343082721.775109380742347No Hit
GTGATCGA2581321116.81338882203487No Hit
TGTTATTC3949730.2572649572037194No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)