FastQCFastQC Report
Wed 8 May 2024
EGAF00005733693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100494305
Total Bases803.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCCA3041802030.268401776598186No Hit
GTCCTAAC2466211224.540805571022158No Hit
ACAGAGGT2424319824.123952098579117No Hit
TATAGTTG2012135720.022385348105047No Hit
TATAGTTA1617890.16099320255013455No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)