FastQCFastQC Report
Wed 8 May 2024
EGAF00005733694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117953157
Total Bases943.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC4208082735.675880214041236No Hit
GGTTTACT2599453222.038012937627435No Hit
AACCGTAA2451044420.779811768836336No Hit
CTAAACGG2447731220.751722652069414No Hit
CTAAACGA1265260.10726800640020173No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)