FastQCFastQC Report
Wed 8 May 2024
EGAF00005733695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108582898
Total Bases868.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTACTG2866925126.403099869373538No Hit
GCAGTAGA2859817526.337642047461284No Hit
AGTAGTCT2603505423.97712206944412No Hit
TTCCCGAC2437106422.44466158934163No Hit
CAGTACTA1246850.11482931685982446No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)