FastQCFastQC Report
Fri 10 May 2024
EGAF00005733696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151553442
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT5162466434.063669764755325No Hit
ACCCGACG3981575426.27175831479961No Hit
TGATATTC3300500821.77780165494361No Hit
GTGATCGA2547256416.807644659103158No Hit
TGTTATTC3759660.24807486721416727No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)