FastQCFastQC Report
Wed 8 May 2024
EGAF00005733700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109645553
Total Bases877.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTACTG2897512426.426173435415112No Hit
GCAGTAGA2885900826.320272195626575No Hit
AGTAGTCT2627551323.96404804488514No Hit
TTCCCGAC2459597322.432257694938162No Hit
CAGTACTA1253070.11428370469343156No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)