FastQCFastQC Report
Wed 8 May 2024
EGAF00005733706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98882094
Total Bases791 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT3471867635.111186055586565No Hit
ATATCCCG3170472132.063156955393765No Hit
GAGCAAGA2903606229.364327579875077No Hit
CGCAGTTC26794942.709786870007021No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)