FastQCFastQC Report
Sat 11 May 2024
EGAF00005733707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences189932605
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCTTA5580592829.38196314424266No Hit
GCTTGGCT5152877627.130031728886152No Hit
TTCATCGG4197471722.099795345828063No Hit
AAACAAAC3923330720.656436002654733No Hit
CGGGCTAA2120510.11164539126918205No Hit
AAACAAAA1900150.10004338117723391No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)