FastQCFastQC Report
Wed 8 May 2024
EGAF00005733708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101453848
Total Bases811.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCCA3068354930.243849400369715No Hit
GTCCTAAC2483399024.478115408693025No Hit
ACAGAGGT2456052124.208565258165464No Hit
TATAGTTG2030321420.01226606998682No Hit
TATAGTTA1639620.16161240133543284No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)