FastQCFastQC Report
Mon 6 May 2024
EGAF00005733727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190184832
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCTTA5585976829.371305488757375No Hit
GCTTGGCT5156173327.111380259809575No Hit
TTCATCGG4205961522.1151258792289No Hit
AAACAAAC3932932220.67952611489017No Hit
CGGGCTAA2114970.11120602930101177No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)