FastQCFastQC Report
Sat 11 May 2024
EGAF00005733728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172212804
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC6612299338.396095681712495No Hit
GTCAGCTA3840013422.298071402402808No Hit
AATGTTAG3358892219.504311653853566No Hit
CGATAGCT3247469818.857307497298518No Hit
AATGTTAA2268780.13174281745043764No Hit
AATGGTAG2109720.12250657041737734No Hit
TCGCCAGA1864700.10827882461050921No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)