FastQCFastQC Report
Fri 3 May 2024
EGAF00005733729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199285257
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC5503208827.614731179035484No Hit
ATAGGCCA5469098927.443569997754523No Hit
TCTCAGTG4919193324.684180726926527No Hit
GAGACTAT3894781519.543751297166956No Hit
TCTCAGTA2409120.12088801932799273No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)