FastQCFastQC Report
Sat 11 May 2024
EGAF00005733733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196980789
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC5434852127.59077231638056No Hit
ATAGGCCA5395942727.393243409132655No Hit
TCTCAGTG4861480724.67997374099258No Hit
GAGACTAT3856648619.5788057281058No Hit
TCTCAGTA2377450.12069451097589015No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)