FastQCFastQC Report
Wed 8 May 2024
EGAF00005733740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130363384
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTAACA3498251126.83461408151234No Hit
ATTCCGAT3458452526.52932436918023No Hit
GAAGGCTG2999815423.011180808255176No Hit
TGGATTGC2974266522.815198629701115No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)